Should the relationship in question be
$$
\mathbb{E}[ M_T \mathbf{1}_{T>S} \mid \color{red}{\mathcal{F}_S} ] \overset{?}{=} \mathbb{E}[ M_T \mathbf{1}_{T>S} \mid \mathcal{F}_{T\color{red}{\wedge S}} ]\,,
$$
in line with the primary problem of determining the general form of $\mathbb E[M_{T}\mid\mathcal F_{S}]$? If this is the case, notice that, on the event $[T\geqslant S]$, $M_T=M_{T\vee S}$ and $M_S=M_{T\wedge S}$. Also, $\mathcal F_{T\wedge S}\subseteq\mathcal F_T$ and $\mathcal F_S\subseteq \mathcal F_{T\vee S}$. Consequently,
$$\mathbb E[M_T{\bf 1}_{T\geqslant S}\mid\mathcal F_S]=\mathbb E[M_{T\vee S}{\bf 1}_{T\geqslant S}\mid\mathcal F_S]=\mathbb E[M_{T\vee S}\mid\mathcal F_S]{\bf 1}_{T\geqslant S}=M_S{\bf 1}_{T\geqslant S}=M_{T\wedge S}{\bf 1}_{T\geqslant S}=\mathbb E[M_{T}\mid\mathcal F_{T\wedge S}]{\bf 1}_{T\geqslant S}=\mathbb E[M_{T}{\bf 1}_{T\geqslant S}\mid\mathcal F_{T\wedge S}]$$
Remark: The relationships above hold because of the interplay between the martingale property and the random variables being measurable with respect to multiple sigma-algebras.
By the martingale property (for martingale $X$ and $t,r>s$),
$$
\mathbb{E}[X_t \mid \mathcal{F}_s]=X_s=\mathbb{E}[X_r \mid \mathcal{F}_s]
$$
Also, for random variable $X$, measurable with respect to both $\mathcal G$ and $\mathcal F$, we have
$$\mathbb{E}[X \mid \mathcal{F}] =X= \mathbb{E}[X \mid \mathcal{G}]$$
When you say for $[T \geq S]$, $\mathcal{F}_S\subseteq \mathcal{F}_T$, do you mean $\mathcal{F}_S ∩ [T\geq S] \subseteq \mathcal{F}_T ∩ [T\geq S]$?
– Calvin Khor Apr 15 '15 at 11:24