First of all, there's nothing here about "never was a subset"; remember that $\mathbb N$ is a subset of itself --- indeed, every set is a subset of itself.
Now for your real question, here's one way to understand induction, which some people have found useful; I hope it helps you, but if it doesn't then just wait for more people to answer. Think about a set $A$ of natural numbers which happens to contain the number $1$, but suppose it's not the whole set $\mathbb N$ of all natural numbers, so some natural number, say $z$, is not in $A$. Now imagine counting from $1$ to $z$ and checking whether the numbers you name are in $A$ or not. So you ask the questions "Is $1$ in $A$?", "Is $2$ in $A$?", "Is $3$ in $A$?", $\dots$, "Is $z-1$ in $A$?", and "Is $z$ in $A$?" The answers to these questions start with "yes" for the first question (because $1\in A$) and end with "No" for the last question (because $z$ was chosen to be outside $A$). So, at some step during the counting, the answers must have switched from "Yes" to "No". (It might have gone back and forth between yes and no several times, but that doesn't matter. All I care about is that, in order to go from "yes" at the beginning to "no" at the end, you need to switch from "yes" to "no" at least once.) Now think about that switching moment. You got a "yes" answer to some question and "no" to the next question. Those questions were about two consecutive natural numbers, say $k$ and $k+1$. So $k\in A$ but $k+1\notin A$. In other words, we have a counterexample to the implication "whenever $k\in A$ then $k+1\in A$."
Summary: If $1\in A$ but some $z\notin A$, then we cannot have the implication "whenever $k\in A$ then $k+1\in A$."
The induction principle is just this same result in contrapositive form. Assuming that "whenever $k\in A$ then $k+1\in A$." we cannot have "$1\in A$ but some $z\notin A$." So, if we also assume $1\in A$ then there cannot be any natural number $z\notin A$. That is, $A$ must contain all of the natural numbers.