This is by no means a full answer, but these are just my thoughts. Write $f(x) = a(x+b)^2$ to be the original function before you take the floor of its value to give the input, which we will call $g(x) = \lfloor f(x) \rfloor$ .
Perhaps you could try to put it in Excel, but only the points where the value of $y$ changes. I would imagine that all the flat parts is confusing it. For example, you know the real value where $f$ gives $5027$ is between $281$ and $282$. Maybe you could just assign $5027$ to their midpoint since on average it would seem that the change might be in the middle.(?)
Another strategy could be to write
$$f(x+1) - f(x) = a(x+b+1)^2 - a(x+b)^2$$
$$ = a (x^2 + 2(b+1)x + (b+1)^2 - x^2 - 2bx - b^2) = a(x + 2b + 1),$$
which grows relatively linearly. And if we had it we could easily find $a$ and $b$. The question is how does $g(x+1) - g(x)$ behave in general and how is it related to $f(x+1) - f(x)$? Because $g$ is not changing much for these very large values and since you say that it seems fairly linear, I would imagine that $a$ is rather small, no matter what $b$ is. I would note that since it seems that $a$ is positive (the number of steps to change from $5027$ is two steps shorter than the number of steps to change from $5028$) and the vertex ($-b$) is less than the area that you are looking at since $g$ is increasing, it seems to me that the best indicator how what $f$ is is at the values of $g$ that are the largest, since there we see the least effect of the rounding down. You might want to try to fit a line to the differences of these values, where you plot a change in the middle of the interval where the jump happened.
For instance, for this info, you might include:
$(281.5, 5026.5), (285.5, 2027.7), (290.5, 2028.5)$
In fact, for finding $a$ it should not matter if there is a $.5$ or not since the rate of change is not affected by adding $0.5$ to each of the corrdinates on the line. It might matter in the long run though for the quadratic fit for large values of $x$.
If you also look not at neighboring steps but much larger jumps: $f(x + n) - f(x) = a(2nx + 2bn + n^2),$ with an error of $\pm 2$ in the measurement, because of the rounding... but in general the error is likely to be near $1$.