Let $k$ be a field and let $V$ be a variety over $k$ (i.e. a reduced separated finite type $k$-scheme).
Let $\overline V$ be the base change $V\times_k \overline k$ to the separable closure $\overline k$ of $k$. We have a canonical fiber product map $\pi:\overline V\rightarrow V$ of $k$-schemes.
As a point set, $V$ is the quotient of $\overline V$ by the action of the absolute galois group $G = \operatorname{Gal}(\overline k / k)$, and $\pi$ is the quotient map. Let $x\in \overline V$ be such that $\pi(x)$ has residue field $k$. Then the galois action on points of $\overline V$ fixes $x$, so that $\pi$ (as a set map) is injective when restricted to such points. Thus $\pi^{-1}$ maps a copy of the $k$-points of $V$ back into $\overline V$, and, with some imprecision, we can call its image "the $k$-points of $\overline V$."
(As an example, let $k=\mathbb{R}$ and let $V=\mathbb{A}^1$. Then $\overline V$ is the complex line aka the complex plane, and the $\mathbb{R}$-points are the real line in the complex plane.)
It seems to me that the $k$-points are Zariski dense in $V$ if and only if the $k$-points (in my sense) are Zariski dense in $\overline V$. Is this true?
One direction is clear to me. If there is a proper closed subset of $V$, say $W$, containing all the $k$-points, then $\pi^{-1}(W)$ is a proper closed subset of $\overline V$ containing all the $k$-points. Thus if the $k$-points are dense in $\overline V$, they are dense in $V$.
The other direction also seems surely true to me, but the argument is less clear. Suppose $\overline W$ is a proper closed subset of $\overline V$ containing all the $k$-points. What I'd like to do is to say that the union of its conjugates under the galois action is also a proper closed subset of $\overline V$, so that then its image under $\pi$ is a proper closed subset of $V$ containing all the $k$-points.
I think I see why it has to be closed. Since $\overline V$ is a variety, it has a finite cover by affine $\overline k$-schemes and in each of them, $\overline W$ is given by a specific ideal in the coordinate ring, which is finitely generated because finite type $\overline k$-schemes are noetherian. The generators are contained in a finite extension of $k$, so they only have finitely many galois conjugates. Conclusion: $\overline W$ only has finitely many galois conjugates, and the union of finitely many closed sets is closed.
However, I don't see why it has to be proper unless I assume $V$ is geometrically irreducible. Can the claimed result fail if $V$ fails to be geometrically irreducible?