Here we solve OP's recurrence relation by a generating function approach. We will see the recurrence relation leads to a slightly different generating function than stated by OP due the specific boundary conditions. Then we use the generating function to show
\begin{align*}
\color{blue}{A(n,k)=\sum_{j=0}^{n-k}\binom{k+j}{j}\binom{k}{n-k-j}+\sum_{j=0}^{n-k}\binom{k+j-1}{j}\binom{k-1}{n-k-j}[[k\geq 1]]}\tag{1}
\end{align*}
We use in (1) Iverson brackets $[[k\geq 1]]$ which is $1$ iff $k\geq 1$ and $0$ otherwise.
Note: OP's recurrence relation is not completely specified. We add a boundary condition $A(0,k), k\geq 1$ which do not conflict with anything else and consider
\begin{align*}
A(n,k) &= A(n-1, k-1)+A(n-2, k-1)+A(n-1, k)\tag{2}\\
A(n, 0) &= 1\\
A(n, 1) &= 2n\\
\color{blue}{A(0, k) }&\color{blue}{= 0\qquad k\geq 1}
\end{align*}
We define the generating function $a(x,y)=\sum_{n,k\geq 0}A(n,k)x^ny^k$ and obtain from the recurrence relation (2)
\begin{align*}
\sum_{{n\geq 2}\atop{k\geq 1}}&A(n,k)x^ny^k\\
&=\sum_{{n\geq 2}\atop{k\geq 1}}A(n-1,k-1)x^ny^k+\sum_{{n\geq 2}\atop{k\geq 1}}A(n-2,k-1)x^ny^k
+\sum_{{n\geq 2}\atop{k\geq 1}}A(n-1,k)x^ny^k\\
&=xy\sum_{{n\geq 1}\atop{k\geq 0}}A(n,k)x^ny^k+x^2y\sum_{{n\geq 0}\atop{k\geq 0}}A(n,k)x^ny^k
+x\sum_{{n\geq 1}\atop{k\geq 1}}A(n,k)x^ny^k\\
&=xy\left(a(x,y)-\sum_{k\geq 0}A(0,k)y^k\right)+x^2ya(x,y)+x\left(a(x,y)-\sum_{n\geq 0}A(n,0)x^n-\sum_{k\geq 0}A(0,k)y^k+1\right)\\
&=xy\left(a(x,y)-1\right)+x^2ya(x,y)+x\left(a(x,y)-\sum_{n\geq 0}x^n-1+1\right)\\
&=xy\left(a(x,y)-1\right)+x^2ya(x,y)+x\left(a(x,y)-\frac{1}{1-x}\right)\tag{3}
\end{align*}
Since
\begin{align*}
\sum_{{n\geq 2}\atop{k\geq 1}}A(n,k)x^ny^k&=a(x,y)-\sum_{n\geq 0}A(n,0)x^n-\sum_{k\geq 1}A(k,0)y^k-x\sum_{k\geq 1}A(k,1)y^k\\
&=a(x,y)-\frac{1}{1-x}-2xy\tag{4}
\end{align*}
Putting (3) and (4) together we obtain
\begin{align*}
\color{blue}{a(x,y)}&\color{blue}{=\frac{1+xy}{1-x-xy-x^2y}}\\
&=\color{blue}{1}+(\color{blue}{1}+\color{blue}{2}y)x+(\color{blue}{1}+\color{blue}{4}y+2 y^2)x^2+(\color{blue}{1}+\color{blue}{6}y+8y^2+2 y^3)x^3\\
&\qquad + (\color{blue}{1}+\color{blue}{8}y+18y^2+12y^3+2y^4)x^4+\cdots
\end{align*}
where the expansion was done with some help of Wolfram Alpha. The coefficients specified by the boundary conditions are marked in blue.
Note, the numerator $1+xy$ in $a(x,y)$ which is different to the numerator $1+x$ stated in OP's generating function.
Now we derive the formula (1) for $A(n,k)$. Since the derivation is similar to that of my other answer the comments and a few details are omitted. We obtain
\begin{align*}
\color{blue}{A(n,k)}&\color{blue}{=[x^ny^k]\frac{1+xy}{1-x-xy-x^2y}}\\
&=[x^ny^k]\frac{1+xy}{1-x-x(1+x)y}\\
&=[x^ny^k]\frac{1+xy}{1-x}\sum_{j=0}^\infty\left(\frac{x(1+x)}{1-x}\right)^jy^j\\
&=[x^{n-k}]\frac{(1+x)^k}{(1-x)^{k+1}}+[x^{n-k}]\frac{(1+x)^{k-1}}{(1-x)^k}[[k\geq 1]]\\
&=[x^{n-k}](1+x)^k\sum_{j=0}^\infty\binom{k+j}{j}x^j+[x^{n-k}](1+x)^{k-1}\sum_{j=0}^\infty\binom{k+j-1}{j}x^j[[k\geq 1]]\\
&\,\,\color{blue}{=\sum_{j=0}^{n-k}\binom{k+j}{j}\binom{k}{n-k-j}+\sum_{j=0}^{n-k}\binom{k+j-1}{j}\binom{k-1}{n-k-j}[[k\geq 1]]}
\end{align*}
and the claim (1) follows.