The naive, immediate approach would be this: any term in the sequence is a linear combination of $x_1,x_2$ and $x_3$. A state would be the coefficients of this linear combination, for the most recent three terms.
So, the initial state is thus
$$
[1,0,0,0,1,0,0,0,1]^T
$$
One step in the process is a two-step thing. We first append three entries to the right, and then we delete three entries on the left. The three entries we append on the right are the averages of every third element in this vector. In this case, the first entry we append will be the average of $1,0$ and $0$, which is $1/3$. The next one is the average of $0,1$ and $0$, which is $1/3$. The last one is the average of $0,0$ and $1$, which is $1/3$. Then we delete the leftmost three entries. This means the next state is
$$
\left[0,1,0,0,0,1,\frac13,\frac13,\frac13\right]^T
$$
and the next one after that is
$$
\left[0,0,1,\frac13,\frac13,\frac13,\frac1{9},\frac4{9},\frac4{9}\right]^T
$$
and so on.
The transition matrix is
$$
\begin{bmatrix}
0&0&0&1&0&0&0&0&0\\
0&0&0&0&1&0&0&0&0\\
0&0&0&0&0&1&0&0&0\\
0&0&0&0&0&0&1&0&0\\
0&0&0&0&0&0&0&1&0\\
0&0&0&0&0&0&0&0&1\\
1/3&0&0&1/3&0&0&1/3&0&0\\
0&1/3&0&0&1/3&0&0&1/3&0\\
0&0&1/3&0&0&1/3&0&0&1/3\\
\end{bmatrix}
$$
So in this approach, we don't have a true Markov process in the conventional sense, as this matrix doesn't preserve the sum of the entries. But it's possible that a lot of the analysis can be carried over.
Also, with our particular initial position, the sum of the entries is actually preserved all the way through the process. One could, conceivably, find the subspace of $\Bbb R^9$ where the above matrix does preserve the sum of the entries, find a new basis on that space, then potentially do real Markov analysis there.