When $X$ is assumed to be a Noetherian, the answer is affirmative (Hartshorne Exercise III 3.6). It comes down to showing that injectives in $\mathfrak{Qco} (X)$ are flasque. The proof can be given by showing that if $\mathcal{I}\in\mathfrak{Qco}(X)$ is injective and $U\subset X$ is open, then $\mathcal{I}|_{U}\in \mathfrak{Qco}(U)$ is still injective. Then by covering $X$ with open affines $U_i=\operatorname{Spec} (A_i)$, we have $\mathcal{I}|_{U_i}\cong \widetilde{M_i}$ for some $A_i$-module $M_i$. In addition $M_i$ must actually be injective since taking global sections of a quasi-coherent sheaf over an affine scheme is exact. Finally Proposition III 3.4 then tells us that $\mathcal{I}|_{U_i}$ is flasque and from here we can just glue local sections together to satisfy the flasque condition for $\mathcal{I}$
This particular proof uses the Noetherian hypothesis a few times, and most crucially in the application of Proposition III 3.4.
So the question remains: Is this still true if we remove the Noetherian hypothesis?
Edit: The application of Proposition III 3.4 does not require the Noetherian hypothesis, as pointed out below. On the other hand when $X$ is not Noetherian, it will not be true in general that the restriction of an injective quasicoherent sheaf to an open subscheme will still be an injective quasicoherenet sheaf.
Edit 2: Here's a construction from Stacks Project that might be useful in finding a counterexample: https://stacks.math.columbia.edu/tag/0273
If $I$ is an injective $A$-module, then $\tilde{I}$ is an injective sheaf in Qcoh(Spec A) (c.f. Hartshorne III Ex. 3.6a). Thus the higher cohomology of $\tilde{I}$ in Qcoh(Spec A) is 0. The Stacks Project construction almost seems to do the trick, but not quite. We'd need to show that the restriction of $\tilde{I}$ to U is still injective, or at the very least still has vanishing H^1. This is known to be true for a locally Noetherian scheme, but in the Stacks example we only have a topologically Noetherian scheme. Perhaps the result could be extended...