i've got myself to a problem, where i am implementing Kabsch algorithm to calculate root-mean-square-deviation. I'm using two matrices to get a rotation and translation matrices. (Java implementation i'm using)
A(4)(3)
and
B(4)(3)
=> Kabsch gives: Translation matrix -
Translation(4)(1)
Rotation matrix -
Rotation(3)(3)
What do i do next? How do i calculate rmsd and if i should modify A or B matrices using translation or rotation matrices?
Sorry for not giving perfect explanation.
