It is not true in general that for any covering map $f : \widetilde X \to X$ of any path connected, locally path connected space, and for any homeomorphism $h : X \to X$ and any lift $\tilde h : \widetilde X \to \widetilde X$ of $h$, the map $\tilde h$ is a homeomorphism.
However, if one adds the hypothesis that the given covering map $f$ has finite degree, which matches your situation, then the conclusion does hold, by an application of the general lifting lemma, as follows.
Pick $p \in X$, and $\tilde p \in \widetilde X$, and let $q=h(p)$ and $\tilde q = \tilde h(\tilde p)$. The fact that a lift $\tilde h : (\widetilde X,\tilde p) \to (\widetilde X,\tilde q)$ of $h$ exists implies that the group isomorphism $h_* : \pi_1(X,p) \to \pi_1(X,q)$ maps the subgroup $f_*(\pi_1(\widetilde X, \tilde p)) < \pi_1(X,p)$ isomorphically into the subgroup $f_*(\pi_1(\widetilde X,\tilde q)) < \pi_1(X,q)$. However, each of the subgroups $f_*(\pi_1(\widetilde X, \tilde p)) < \pi_1(X,p)$ and $f_*(\pi_1(\widetilde X,\tilde q)) < \pi_1(X,q)$ has finite index equal to $\text{degree}(f)$. Also, the group isomorphism $h_*$ preserves index of subgroups. The only way one subgroup of finite index can include into another subgroup of the same finite index is if those two subgroups are equal. Therefore, $h_*$ maps $f_*(\pi_1(\widetilde X, \tilde p))$ is isomorphically onto $f_*(\pi_1(\widetilde X,\tilde q))$.
The inverse homomorphism $(h^{-1})_* : \pi_1(X,q) \to \pi_1(X,p)$ therefore maps $f_*(\pi_1(\widetilde X,\tilde q))$ isomorphically onto $f_*(\pi_1(\widetilde X, \tilde p))$. An application of the general lifting lemma then produces a lift of $f^{-1}$ that takes $\tilde q$ to $\tilde p$, and the uniqueness clause of the general lifting lemma let's one conclude that this lift is a continuous inverse of $\tilde f$, hence $\tilde f$ is a homeomorphism.