In my vector analysis class, we were given a vector field
$\mathbf{F}(\mathbf{r})= \frac{1}{r^3}\mathbf{r}$
This vector field's divergence is 0, so according to the divergence theorem the flux over any closed object's surface $S_1$ within this field is 0. However, when the object has two surfaces, one outer surface $S_1$ and an inner surface, shaped like a ball with radius $\epsilon$, centered at $(0,0)$, when we calculate the flux over the surface $S_1$, it comes out as $4\pi$.
The exercise itself didn't require us to answer why or how, but I can't understand the physical interpretation of what's going on. Why does adding a second surface, $S_\epsilon$, to the object change the flux over the original surface, $S_1$?