The Gibbs phenomenon is a theorem about Fourier series, and
arises sometimes in PDE that can be solved by Fourier series.
It doesn't depend on the PDE itself, but if you include
boundary values that have discontinuities, and try to solve
using a Fourier series, then you would expect the Gibbs
theorem to affect the extent to which your series converges.
To understand Gibbs, it is useful to see that there are
several ways to define convergence of a series of functions
to some limit function.
The partial sums, evaluated at each point
of the domain, converge to the limit function value there.
(pointwise convergence)
The maximum difference between the partial sums
and the function tends to zero. (uniform convergence)
The integral of the square of the difference between
the partial sums and the function tends to zero.
(convergence in mean, or $L^2$ convergence)
For the Fourier partial sums of a periodic function $f$ we have
at least the following:
Item (1) almost holds if $f$ is piecewise differentiable. The
extra requirement is that at jumps in $f$ you get the
average of the left and right limits of $f$.
Item (2) holds if $f$ is differentiable.
Item (3) holds no matter how rough $f$ is, as long as
$\int f^2 dx$ exists and is finite.
Finally, the Gibbs theorem is that item (2) does not
hold when $f$ is piecewise differentiable, and in
particular the maximum difference (the ``overshoot")
remains more than
ten percent of the jump amount no matter how many
terms you take.
Applying this information to a PDE: if you can solve
your PDE by separation of variables resulting in a
Fourier series, and a boundary value has a jump discontinuity,
then the Gibbs phenomenon comes into play. Suppose
you want to use your series at a point near the
boundary, and you want to use say, 50 terms or less
to approximate the solution,
how accurate is it? the answer is: you don't know--
even if you know that a solution exists,
your partial sum might be more than ten percent in error.