$\bf{Question \ 1:}$
I think you should be more clear:
First of all you say that your map is an embedding of $S^2$ in $\mathbb R^4$. An embedding is injective, and as you said just one second later, your map sends opposites points to the same point.
Moreover, it is not so clear why your map $S^2/\mathbb Z_2\to \mathbb R^4$ should be injective and which is exactly the role of your coefficients $a,b,c$. We have to prove that if two points $(x_0',y_0', z_0')$, $(x_0,y_0,z_0)\in S^2$ have the same image, then they are equal or just the opposite to each other.
I have thought to this trick, although I don't know if there is a more easy proof. Remembering that our points are on $S^2$, let us compute
$$(x_0'+y_0'+z_0')^2=1+2x_0'y_0'+2x_0'z_0'+2y_0'z_0'=1+2x_0y_0+2x_0z_0+2y_0z_0=(x_0+y_0+z_0)^2 \implies x_0'+y_0'+z_0'=(-1)^\alpha(x_0+y_0+z_0).$$
However, we can do the same also for others combinations:
$$(x_0'+y_0'-z_0')^2=\dots=(x_0+y_0-z_0)^2 \implies x_0'+y_0'-z_0'=(-1)^\beta(x_0+y_0-z_0),$$
$$(x_0'-y_0'-z_0')^2=\dots=(x_0-y_0-z_0)^2 \implies x_0'+-y_0'-z_0'=(-1)^\gamma(x_0-y_0-z_0).$$
To sumarize, we have got the following linear system
$$ \begin{pmatrix}1 & 1& 1\\ 1 &1& -1\\ 1 &-1&-1 \end{pmatrix}\begin{pmatrix} x_0' \\ y_0' \\ z_0'\end{pmatrix}=\begin{pmatrix}(-1)^\alpha & 0& 0\\ 0 &(-1)^\beta& 0\\ 0 &0&(-1)^\gamma \end{pmatrix}\begin{pmatrix}1 & 1& 1\\ 1 &1& -1\\ 1 &-1&-1 \end{pmatrix}\begin{pmatrix} x_0 \\ y_0 \\ z_0\end{pmatrix}.$$
However, the left matrix is invertible and its inverse is
$$\begin{pmatrix}1 & 1& 1\\ 1 &1& -1\\ 1 &-1&-1 \end{pmatrix}^{-1}=\frac{1}{2}\begin{pmatrix}1 & 0& 1\\ 0 &1& -1\\ 1&-1&0 \end{pmatrix}$$
Therefore, for each fixed $\alpha,\beta, \gamma$ we have got a unique solution
$$ \begin{pmatrix} x_0' \\ y_0' \\ z_0'\end{pmatrix}=\frac{1}{2}\begin{pmatrix}1 & 0& 1\\ 0 &1& -1\\ 1&-1&0 \end{pmatrix}\begin{pmatrix}(-1)^\alpha & 0& 0\\ 0 &(-1)^\beta& 0\\ 0 &0&(-1)^\gamma \end{pmatrix}\begin{pmatrix}1 & 1& 1\\ 1 &1& -1\\ 1 &-1&-1 \end{pmatrix}\begin{pmatrix} x_0 \\ y_0 \\ z_0\end{pmatrix}=\frac{1}{2}\begin{pmatrix}1 & 0& 1\\ 0 &1& -1\\ 1&-1&0 \end{pmatrix}\begin{pmatrix}(-1)^\alpha & (-1)^\alpha& (-1)^\alpha\\ (-1)^\beta &(-1)^\beta& (-1)^{\beta+1}\\ (-1)^\gamma &(-1)^{\gamma+1}&(-1)^{\gamma+1} \end{pmatrix}\begin{pmatrix} x_0 \\ y_0 \\ z_0\end{pmatrix}=\frac{1}{2}\begin{pmatrix}(-1)^\alpha+(-1)^\gamma & (-1)^\alpha+(-1)^{\gamma+1}& (-1)^\alpha+(-1)^{\gamma+1}\\ (-1)^\beta+(-1)^{\gamma+1} &(-1)^\beta+(-1)^\gamma& (-1)^{\beta+1}+(-1)^\gamma\\ (-1)^\alpha+(-1)^{\beta+1} &(-1)^\alpha+(-1)^{\beta+1}&(-1)^\alpha+(-1)^{\beta}\end{pmatrix}\begin{pmatrix} x_0 \\ y_0 \\ z_0\end{pmatrix}.$$
Observe that if $(\alpha,\beta,\gamma)=(0,0,0)$, then the solution is trivial, and is $(x_0,y_0,z_0)$. Instead, if $(\alpha,\beta,\gamma)=(1,1,1)$, then the solution is trivial too, and it is the opposite point $(-x_0,-y_0,-z_0)$.
It remains to discuss the others $6$ possible solutions:
$(\alpha,\beta,\gamma)=(1,0,0)$:
$$\begin{pmatrix} x_0' \\ y_0' \\ z_0'\end{pmatrix}=\frac{1}{2}\begin{pmatrix}(-1)^\alpha+(-1)^\gamma & (-1)^\alpha+(-1)^{\gamma+1}& (-1)^\alpha+(-1)^{\gamma+1}\\ (-1)^\beta+(-1)^{\gamma+1} &(-1)^\beta+(-1)^\gamma& (-1)^{\beta+1}+(-1)^\gamma\\ (-1)^\alpha+(-1)^{\beta+1} &(-1)^\alpha+(-1)^{\beta+1}&(-1)^\alpha+(-1)^{\beta}\end{pmatrix}\begin{pmatrix} x_0 \\ y_0 \\ z_0\end{pmatrix}=\begin{pmatrix}0 & -1& -1\\ 0&1& 0\\ -1 &-1&0\end{pmatrix}\begin{pmatrix} x_0 \\ y_0 \\ z_0\end{pmatrix}=\begin{pmatrix}-y_0-z_0 \\ y_0 \\ -x_0-y_0\end{pmatrix}$$
Now we have impose that this solution belongs to $S^2$:
$$(-y_0-z_0)^2+y_0^2+(-x_0-y_0)^2=1+2y_0^2+2y_0z_0+2x_0y_0=1 \implies y_0(y_0+z_0+x_0)=0 \implies y_0=0 \quad \text{or} \quad z_0=-x_0-y_0$$
If $z_0=-x_0-y_0$, then we would have $\begin{pmatrix} x_0' \\ y_0' \\ z_0'\end{pmatrix}=\begin{pmatrix}-y_0-z_0 \\ y_0 \\ -x_0-y_0\end{pmatrix}=\begin{pmatrix} x_0\\ y_0 \\ z_0\end{pmatrix}$, and we are done.
Instead, if $y_0=0$, then we would have $\begin{pmatrix} x_0' \\ y_0' \\ z_0'\end{pmatrix}=\begin{pmatrix}-y_0-z_0 \\ y_0 \\ -x_0-y_0\end{pmatrix}=\begin{pmatrix} -z_0\\0 \\ -x_0\end{pmatrix}$. However, we observe that we never used until now our coefficients $a,b,c$. We remember that we have also the relation
$$a(x_0')^2+b(y_0')^2+c(z_0')^2=ax_0^2+by_0^2+cz_0^2 \implies az_0^2+cx_0^2=ax_0^2+cz_0^2 \implies (a-c)(z_0^2-x_0^2)=0 \implies z_0=\pm x_0$$
because $a\neq c$, by assumption. If $z_0=x_0$,then we have obtained that $\begin{pmatrix} x_0' \\ y_0' \\ z_0'\end{pmatrix}=\begin{pmatrix} -x_0\\0 \\ -x_0\end{pmatrix}$, so it is the opposite point of $\begin{pmatrix} x_0 \\ y_0 \\ z_0\end{pmatrix}=\begin{pmatrix} x_0\\0 \\ x_0\end{pmatrix}$; instead if $z_0=-x_0$, then they are the same point $\begin{pmatrix} x_0' \\ y_0' \\ z_0'\end{pmatrix}=\begin{pmatrix} x_0\\0 \\ -x_0\end{pmatrix}=\begin{pmatrix} x_0 \\ y_0 \\ z_0\end{pmatrix}$.
We have concluded this case. You can do the same for the remain $5$ systems. Clearly, you will use there that $a\neq b$,$a \neq c$ and $b\neq c$.
Thus, we can conclude that $S^2/\mathbb Z_2\to \mathbb R^4$ is injective.
Now let us try to get the image of this interesting map:
Let us call by $X,Y,Z, W$ the variables of $\mathbb R^4$. We observe that
$$\begin{cases}
aYZ=X(ax^2) \\
bXZ=Y(by^2) \\
cXY=Z(cz^2)
\end{cases}\implies \begin{cases}
aY^2Z^2=XYZ(ax^2) \\
bX^2Z^2=XYZ(by^2) \\
cX^2Y^2=XYZ(cz^2)
\end{cases} \implies aY^2Z^2+ bX^2Z^2+cX^2Y^2=XYZ(ax^2+by^2+cz^2)=XYZW$$
Therefore one of the equations is
$$aY^2Z^2+bX^2Z^2+cX^2Y^2=XYZW.$$
We can use the same approach to deduce the remain equations:
$$Y^2Z^2+X^2Z^2+X^2Y^2=XYZ,$$
$$(W-a)(W-b)(W-c)+(c-b)^2X^2(W-a)+(c-a)^2Y^2(W-b)+(a-b)^2Z^2(W-c)=0$$
$$X[(b-c)^2X^2+(W-b)(W-c)]+[(c-a)^2Y^2X-(c-a)(b-a)YZ+(b-a)^2Z^2X]=0$$
$$Y[(a-c)^2Y^2+(W-a)(W-c)]+[(c-b)^2X^2Y-(a-b)(c-b)XZ+(a-b)^2Z^2Y]=0$$
$$Z[(a-b)^2Z^2+(W-a)(W-b)]+[(b-c)^2X^2Z-(a-c)(b-c)XY+(a-c)^2Y^2Z]=0$$
Are they enough? Let us take a point $(X, Y, Z, W)$ satisfying these equations and prove that it belongs to the image of our map:
First suppose that $XYZ\neq 0$. Since
$XYZ=Y^2Z^2+X^2Z^2+X^2Y^2>0$, then $\frac{YZ}{X}, \frac{XZ}{Y}, \frac{XY}{Z}>0$.
Observe that if $X>0$, then only two options can occur, i.e. $Y>0$ and $Z>0$, or $Y<0$ and $Z<0$. Instead if $X<0$, then the others two options are $Y>0$, $Z<0$, or $Y<0$ and $Z>0$. This suggests to define
$x:=\sqrt{\frac{YZ}{X}}, y:=sign(XY)\sqrt{\frac{XZ}{Y}}$, and $z:=sign(XZ)\sqrt{\frac{XY}{Z}}$. By construction, we have $(x,y,z)\in S^2$.
Then
$$\begin{cases}
y\cdot z=sign(XY) \cdot sign(XZ)\cdot \vert X\vert=X; \\
x \cdot z=sign(XZ)\cdot \vert Y\vert=Y;\\
x\cdot y=sign(XY)\cdot \vert Z\vert=Z;\\
ax^2+by^2+cz^2=W
\end{cases}.$$
Thus our point $(X,Y,Z,W)$ belongs to our image.
Now let us suppose that $XYZ=0$. By symmetry of the problem, let us study what happens just when $Z=0$. In this case we would have
$$ 0=XYZ=Y^2Z^2+X^2Z^2+X^2Y^2=X^2Y^2.$$
Therefore $X=0$, or $Y=0$. Suppose $Y=0$, then the third equation tells us
$$(W-a)(W-b)(W-c)=-(c-b)^2X^2(W-a)$$.
If $W\neq a$, then we have $X^2=-\frac{(W-b)(W-c)}{(c-b)^2}$. In particular, $W-b$ and $W-c$ have to be opposite sign. Let us define
$$x:=0, \quad y:=sign(X)\sqrt{\vert \frac{W-c}{b-c}\vert }, \quad z:=\sqrt{\vert -\frac{W-b}{b-c}\vert }.$$
Then
$$\begin{cases}
y\cdot z=sign(X)\sqrt{\vert \frac{W-c}{b-c}\vert \cdot \vert -\frac{W-b}{b-c}\vert}=X; \\
x \cdot z=0=Y;\\
x\cdot y=0=Z;\\
ax^2+by^2+cz^2=b\vert \frac{W-c}{b-c}\vert+c\vert -\frac{W-b}{b-c}\vert=W
\end{cases}.$$
Therefore, it remains only to study the points of the form $(X, 0,0, a)$, $(0,Y,0,b)$, and $(0,0,Z,c)$.
Here we have to use one of our remain three equations, depending by which points are we considering. For instance, let us consider the point $(X, 0,0, a)$. Then the fourth equation tells us
$$X[(b-c)^2X^2+(a-b)(a-c)]=0$$
If $X\neq 0$, then we would have $X^2=-\frac{(a-b)(a-c)}{(b-c)^2}$. In this case our point belongs to the image, since the point of coordinates
$$x:=0, \quad y:=sign(X)\sqrt{\vert \frac{a-c}{b-c}\vert }, \quad z:=\sqrt{\vert -\frac{a-b}{b-c}\vert }$$
maps to $(X, 0,0, a)$.
It remain to study the point $(0,0,0,a)$. Here it is simply: it belongs to our image since $(x,y,z)=(1,0,0)$ maps exactly to $(0,0,0,a)$.
We have proved that the image of our map is an algebraic surface given by the six equations
$$p_1(X,Y,Z,W):=aY^2Z^2+bX^2Z^2+cX^2Y^2-XYZW=0,$$
$$p_2(X,Y,Z,W):=Y^2Z^2+X^2Z^2+X^2Y^2-XYZ=0,$$
$$p_3(X,Y,Z,W):=(W-a)(W-b)(W-c)+(c-b)^2X^2(W-a)+(c-a)^2Y^2(W-b)+(a-b)^2Z^2(W-c)=0,$$
$$p_4(X,Y,Z,W):=X[(b-c)^2X^2+(W-b)(W-c)]+[(c-a)^2Y^2X-(c-a)(b-a)YZ+(b-a)^2Z^2X]=0,$$
$$p_5(X,Y,Z,W):=Y[(a-c)^2Y^2+(W-a)(W-c)]+[(c-b)^2X^2Y-(a-b)(c-b)XZ+(a-b)^2Z^2Y]=0,$$
$$p_6(X,Y,Z,W):=Z[(a-b)^2Z^2+(W-a)(W-b)]+[(b-c)^2X^2Z-(a-c)(b-c)XY+(a-c)^2Y^2Z]=0.$$
As every algebraic varieties on the field of real numbers, our surface is described as the zero locus of just a single equation, the sum of the squares of our $6$ polynomial:
$$\mathbb P^2(\mathbb R)\cong Z(p_1^2+\dots +p_6^2)\subseteq \mathbb R^4.$$
$\bf{Question \ 2:}$
I am sorry, I don't understand exactly what you want. What I can say is that if you consider the projection of you map to the first three coordinates, so basically if you consider the map sending $(x,y,x)\to (y\cdot z, x\cdot z, x\cdot y)\in \mathbb R^3$, then your map is an isomorphism only for $xyz\neq 0$ (I suggest you to follow my proof above of the injectivity of the map and see where are the obstructions, that should be when $x$ or $y$ or $z$ are equal to zero)
So, outside $xyz=0$, our map in $\mathbb R^3$ is an isomorphism to the image $XYZ\neq 0$, and it is defined by the equation
$$ Y^2Z^2+X^2Z^2+X^2Y^2-XYZ=0.$$
This surface is the so-called $\textbf{Roman Surface}$: https://en.wikipedia.org/wiki/Roman_surface