As opposed to tracking any individual point, what I'm concerned with is a manifold that occupies the same set of points as its image under the smooth map.
Suppose $\Phi(x,y)=(x+1,y)$. Consider an arbitrary horizontal line $y=a$.
While no individual points end up where they were before, it's nonetheless true that the horizontal line simply shifts to the right. Thus, the new horizontal line entirely coincides with the old horizontal line.
Consider the map $\Phi(x,y)=(y^3,x^3)$. Under this transformation, most individual points will not end up where they were before. However, the line $y=x$ will rearrange itself once again into the same $y=x$ line. The same is true for the line $y=-x$. The degenerate hyperbola $x^2=y^2$ could be said to be the most general set of points that will rearrange themselves into the same exact curve as before.
This is what I mean by a manifold (or, in these two examples, a curve) that occupies the same set of points as its image, or - in other words - entirely coincides - or overlaps - with its image under $\Phi$.
It seems analogous to the eigenvectors of a linear transformation.