I figured out the following proof.
Recall that $p/q$ (with $p,q$ relatively prime) is called a 1-convergent of $\alpha$ if $|q\alpha - p| < 1/q$.
Lemma. If $p/q$ is a 1-convergent of $\alpha$, then
$$
\sum_{n=1}^{q} \frac{1}{\{n\alpha\}} > \frac{q}{2} \log(q).
$$
Proof. If $n < q$, then
$$
\left|n\alpha - n \frac{p}{q}\right| = \frac{n}{q} |q\alpha - p| < \frac{n}{q^2} < \frac{1}{q}.
$$
It follows that
$$
n\alpha = n \frac{p}{q} + \frac{\theta}{q},
$$
where $|\theta| < 1$. Since $p$ is relatively prime to $q$ and $n < q$, $\{np/q\} \geq 1/q$, so that $\lfloor n\alpha \rfloor = \lfloor np/q \rfloor$. It follows that
$$
\{n\alpha\} < \left\{n \frac{p}{q}\right\} + \frac{1}{q} \leq 2\left\{n \frac{p}{q}\right\}.
$$
Hence,
$$
\sum_{n=1}^{q-1} \frac{1}{\{n\alpha\}} \geq \sum_{n=1}^{q-1} \frac{1}{2\{np/q\}} = \frac{q}{2} \sum_{k=1}^{q-1} \frac{1}{k}.
$$
(The inequality is not strict because it is possible that $q = 1$, so that both sides are trivially zero.) Since obviously $\{q\alpha\} < 2$,
$$
\sum_{n=1}^{q} \frac{1}{\{n\alpha\}} > \frac{q}{2} \sum_{k=1}^{q-1} \frac{1}{k} + \frac12 = \frac{q}{2} \sum_{k=1}^{q} \frac{1}{k} > \frac{q}{2} \log(q).
$$
$\square$
Theorem. Suppose $\alpha$ is badly approximable. Then there exists $c > 0$ such that for sufficiently large $N$,
$$
\sum_{n=1}^{N} \frac{1}{\{n\alpha\}} > cN \log(N).
$$
Proof. Since $\alpha$ is badly approximable, it is of constant type. (See theorem 6 of chapter 2 of Lang's Introduction to Diophantine Approximations.) That is, there exists $c' > 1$ such that for every sufficiently large $N$, there exists a 1-convergent $p/q$ such that $N/c' \leq q < N$. For sufficiently large $N$, pick such a $q$. Then
$$
\sum_{n=1}^{N} \frac{1}{\{n\alpha\}} > \sum_{n=1}^{q} \frac{1}{\{n\alpha\}}.
$$
Using the lemma,
$$
\sum_{n=1}^{N} \frac{1}{\{n\alpha\}} > \frac{q}{2} \log(q) \geq \frac{N}{2c'} \log\left(\frac{N}{c'}\right).
$$
Choose arbitrary $c'' \in (0,1)$. Then for sufficiently large $N$,
$$
(1 - c'') N \log(N) > \log(c') N,
$$
so that
$$
c'' N \log(N) < N \log\left(\frac{N}{c'}\right).
$$
Let $c = c''/2c'$. Then for sufficiently large $N$,
$$
\sum_{n=1}^{N} \frac{1}{\{n\alpha\}} > cN \log(N).
$$
$\square$