Partial answer.
The roots of $p(x)=\sum_{j=0}^{100} x^j$ are $x_k=e^{2i\pi k/101}$ for $k=1,\dots,100.$
Note that $x_k=x_1^k,$ and that $\overline{x_k}=x_{101-k}=x_k^{-1}.$
Letting $$p_k(x)=(x-x_k)(x-x_{101-k})=x^2-2\cos(2\pi k/101)x+1,$$
we can factorize $p(x)$ as:
$$p(x)=\prod_{k=1}^{50} p_k(x)$$
Let $q_k(x)=p(x)/p_k(x).$ Then $q_k(x_k)=p''(x_k)$ and $q_k(x_{101-k})=p''(x_{101-k}).$
Writing $$\frac{x^{46}}{p(x)}=\sum_{k=1}^{50}\frac{a_kx+b_k}{p_k(x)}$$ you get
$$\frac{x_k^{46}}{p''(x_k)}=a_kx_k+b_k\\
\frac{x_{k}^{-46}}{p''(x_{k}^{-1})}=a_kx_{k}^{-1}+b_k.$$
You can solve for $a_k$ and $b_k.$ They will be real numbers.
I don't see an easier way to get the answer. But I don't see an obvious way to get closed formula for $a_k,b_k.$ The hard part seems to me to be evaluating $p''.$
Then you get the integral is $$\sum_{k=1}^{50}\int_{0}^1\frac{a_kx+b_k}{p_k(x)}dx, $$
These will involve $\log$ and $\tan^{-1}.$ In general, for $\theta\in(0,\pi),$ $$\int_{0}^{1}\frac{Ax+B}{(x-\cos\theta)^2+\sin^2\theta}\,dx=\frac A2\log(2-2\cos\theta)+\frac{A\cos\theta+B}{\sin \theta}\left(\pi-\frac32\theta\right)$$