Let denote the way the runner is passing while he's accelerating $s_1$, because we want to find the average acceleration we have:
$$s_1 = v_0t + \frac{at_1^2}{2}$$
The initial velocity is 0, so we left out the first term. Also we make a change $a = \frac{\Delta v}{t_1}$
$$s_1 = \frac{\Delta vt_1}{2}$$
We know that $\Delta v = v - v_0$, where $v$ is the maximum reached velocity. We know that $v_0 = 0$, so $\Delta v = v$. Now we get:
$$s_1 = \frac{vt_1}{2}$$
Know let's denote the second part of the way, when the velocity is constant as $s_2$. We have:
$$s_2 = v(t-t_1)$$
We know that the sum of the two distances is $100m$ so we have:
$$s_1 + s_2 = 100$$
$$\frac{vt_1}{2} + v(t-t_1) = 100$$
$$\frac{4.1 \cdot v}{2} + v(9-4.1) = 100$$
$$2.05 \cdot v + 4.9 \cdot v = 100$$
$$6.95 \cdot v = 100$$
$$v = \frac{100m}{6.95s}$$
$$v \approx 14.39m/s$$
Now we substitute back:
$$a = \frac{\Delta v}{t_1} = \frac{v}{t_1} = \frac{14.39}{4.1} \approx 3.51 \frac{m}{s^2}$$