If I say
the difference between $x$ and $y$
Does that mean $x - y$ or $y - x$ or $|x - y|$?
If I say
the difference between $x$ and $y$
Does that mean $x - y$ or $y - x$ or $|x - y|$?
If I were to say "the difference between $x$ and $y$," I would probably mean $|x-y|$, simply because the use of "between" suggests symmetry between $x$ and $y$.
As Mariano pointed out, the meaning is somewhat ambiguous and subjective. It pretty much never hurts to add a word or two of clarification. If I personally use it, I'm usually referring to the difference in absolute terms, so $|x - y|$.