Method 1: Residues
Consider the contour integral
$$\oint_C dz \frac{e^{i k z}}{(1+z^2)^2}$$
where $C$ is a semicircle in the upper half plane; here, $k>0$. Then by the residue theorem and Jordan's lemma:
$$\begin{align}\int_{-\infty}^{\infty} dx \frac{e^{i k x}}{(1+x^2)^2} &= i 2 \pi \operatorname*{Res}_{z=i} \frac{e^{i k z}}{(1+z^2)^2}\\ &= i 2 \pi \left [\frac{d}{dz} \frac{e^{i k z}}{(z+i)^2} \right ]_{z=i}\\ &= i 2 \pi \left [\frac{i k\, e^{i k z}}{(z+i)^2} - \frac{2 e^{i k z}}{(z+i)^3} \right ]_{z=i}\\ &= \frac{\pi}{2} (k+1) e^{-k}\end{align}$$
For $k \lt 0$, $C$ is a semicircle in the lower half plane; for the same reasons as above, we have:
$$\begin{align}\int_{-\infty}^{\infty} dx \frac{e^{i k x}}{(1+x^2)^2} &= -i 2 \pi \operatorname*{Res}_{z=-i} \frac{e^{i k z}}{(1+z^2)^2}\\ &= -i 2 \pi \left [\frac{d}{dz} \frac{e^{i k z}}{(z-i)^2} \right ]_{z=-i}\\ &= -i 2 \pi \left [\frac{i k\, e^{i k z}}{(z-i)^2} - \frac{2 e^{i k z}}{(z-i)^3} \right ]_{z=-i}\\ &= \frac{\pi}{2} (-k+1) e^{k}\end{align}$$
Therefore,
$$\int_{-\infty}^{\infty} dx \frac{e^{i k x}}{(1+x^2)^2} = \frac{\pi}{2} (1+|k|) e^{-|k|}$$
Method 2: Convolution
Knowing that the FT of $1/(1+x^2)$ is $\pi \, e^{-|k|}$, we may use the convolution theorem to deduce that
$$\int_{-\infty}^{\infty} dx \frac{e^{i k x}}{(1+x^2)^2} = \frac{\pi^2}{2 \pi} \int_{-\infty}^{\infty} dk' e^{-|k'|} \, e^{-|k-k'|}$$
Again, the way we evaluate the integral on the RHS depends on the sign of $k$. For $k \gt 0$, this integral is
$$\frac{\pi}{2} \int_{-\infty}^0 dk' \, e^{k'} \, e^{-(k-k')} + \frac{\pi}{2} \int_{0}^k dk' \, e^{-k'} \, e^{-(k-k')}+ \frac{\pi}{2} \int_{k}^{\infty} dk' \, e^{-k'} \, e^{k-k'}$$
For $k \lt 0$, on the other hand, the integral is
$$\frac{\pi}{2} \int_{-\infty}^k dk' \, e^{k'} \, e^{-(k-k')} + \frac{\pi}{2} \int_{k}^0 dk' \, e^{k'} \, e^{k-k'}+ \frac{\pi}{2} \int_{0}^{\infty} dk' \, e^{-k'} \, e^{k-k'}$$
Evaluation of the above integrals reproduces the result derived above.