I post here another possible answer, owing to a friend. To avoid the troublesome produced by the abstract index set $I$ without any structure, we set $I:=\mathbb R_+=[0,\infty)$ from now on. And we assume that two processes both start from $0$, i.e., $X_0=Y_0=0$.
Statement A: Two processes$\{X_t\}_{t\in I},\{Y_t\}_{t\in I}$ are independent.
Statement B: $X_t, Y_t$ are independent for any $t\in I$.
Statement C: The joint process $\{(X_t,Y_t)\}_{t\in I}$ have independent and stationary increments.
Now we can make an assertion.
Proposition. Under Statement C, we have A $\Leftrightarrow$ B.
Proof. It's enough to show that B+C $\Rightarrow$ A. Fix an finite increasing index sequence $0=t_0<t_1<t_2<\cdots<t_n<\infty$, what we want to prove is $(X_{t_1},X_{t_2},\cdots,X_{t_n})$ and $(Y_{t_1},Y_{t_2},\cdots,Y_{t_n})$ are independent, or equivalently, $(X_{t_1}-X_{t_0},X_{t_2}-X_{t_1},\cdots,X_{t_n}-X_{t_{n-1}})$ and $(Y_{t_1}-Y_{t_0},Y_{t_2}-Y_{t_1},\cdots,Y_{t_n}-Y_{t_{n-1}})$ are independent. Now we use the induction argument.
Suppose that $(X_{t_1}-X_{t_0},\cdots,X_{t_{n-1}}-X_{t_{n-2}})$ and $(Y_{t_1}-Y_{t_0},\cdots,Y_{t_{n-1}}-Y_{t_{n-2}})$ are independent. Since $\{(X_t,Y_t)\}$ have independent increments, we know that $(X_{t_n}-X_{t_{n-1}},Y_{t_n}-Y_{t_{n-1}})$ is independent with $(X_{t_1}-X_{t_0},Y_{t_1}-Y_{t_0},\cdots,X_{t_{n-1}}-X_{t_{n-2}},Y_{t_{n-1}}-Y_{t_{n-2}})$. By virtue of the stationary increments, $(X_{t_n}-X_{t_{n-1}},Y_{t_n}-Y_{t_{n-1}})$ has the same distribution with $(X_{t_n-t_{n-1}},Y_{t_n-t_{n-1}})$, which has independent components by Statement B. As a consequence, $X_{t_n}-X_{t_{n-1}}$ and $Y_{t_n}-Y_{t_{n-1}}$ are independent. Now we summarize that $(X_{t_1}-X_{t_0},\cdots,X_{t_{n-1}}-X_{t_{n-2}})$, $(Y_{t_1}-Y_{t_0},\cdots,Y_{t_{n-1}}-Y_{t_{n-2}})$, $X_{t_n}-X_{t_{n-1}}$, $Y_{t_n}-Y_{t_{n-1}}$ are mutually independent, what we need then follows.